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Bovine GRK2 in complex with Gbetagamma subunits and CCG215022
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4PNK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 277 50 mM MES, 0.8-1.2 M sodium chloride, 8-16% PEG3350
Crystal Properties Matthews coefficient Solvent content 3.47 64.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.554 α = 90 b = 239.927 β = 90 c = 208.872 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2015-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97857 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 30 97 0.067 0.078 0.04 12.6 3.5 47002
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.64 86.1 0.391 0.476 0.268 0.909 2.5 2068
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4PNK 2.56 30 44643 2316 94.52 0.2048 0.2017 0.264 0.2577 RANDOM 71.102
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.3 -3.76 2.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.93 r_dihedral_angle_4_deg 19.979 r_dihedral_angle_3_deg 16.732 r_dihedral_angle_1_deg 7.184 r_mcangle_it 5.541 r_mcbond_it 3.53 r_mcbond_other 3.529 r_angle_refined_deg 1.646 r_angle_other_deg 0.83 r_chiral_restr 0.082
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.93 r_dihedral_angle_4_deg 19.979 r_dihedral_angle_3_deg 16.732 r_dihedral_angle_1_deg 7.184 r_mcangle_it 5.541 r_mcbond_it 3.53 r_mcbond_other 3.529 r_angle_refined_deg 1.646 r_angle_other_deg 0.83 r_chiral_restr 0.082 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8163 Nucleic Acid Atoms Solvent Atoms 36 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling Coot model building PDB_EXTRACT data extraction HKL-2000 data reduction PHASER phasing