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The E171Q mutant structure of Bgl6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OIN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 298 25% PEG 8K, 600 mM NaCl, 100 mM Tris-HCl pH 8.0, 1M glucose
Crystal Properties Matthews coefficient Solvent content 2.19 43.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.247 α = 90 b = 95.697 β = 125.61 c = 94.976 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2016-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.98 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 98.5 0.042 0.99 48.3 3.7 84462
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 99.8 0.081 0.993 25.8 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1OIN 1.8 50 79066 4151 98.14 0.12419 0.12275 0.1354 0.15117 0.1653 RANDOM 19.629
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.81 1.07 -2.15 -0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.179 r_dihedral_angle_4_deg 16.24 r_dihedral_angle_3_deg 11.822 r_long_range_B_other 5.843 r_long_range_B_refined 5.842 r_dihedral_angle_1_deg 5.666 r_scangle_other 4.773 r_scbond_other 3.303 r_scbond_it 3.302 r_angle_other_deg 2.356
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.179 r_dihedral_angle_4_deg 16.24 r_dihedral_angle_3_deg 11.822 r_long_range_B_other 5.843 r_long_range_B_refined 5.842 r_dihedral_angle_1_deg 5.666 r_scangle_other 4.773 r_scbond_other 3.303 r_scbond_it 3.302 r_angle_other_deg 2.356 r_mcangle_other 2.344 r_mcangle_it 2.343 r_mcbond_it 1.853 r_mcbond_other 1.847 r_angle_refined_deg 1.442 r_chiral_restr 0.224 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_gen_planes_other 0.008 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7184 Nucleic Acid Atoms Solvent Atoms 903 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement PHENIX data reduction HKL-2000 data scaling PHENIX phasing