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Escherichia coli Periplasmic Aldehyde Oxidase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RM6 PDB ENTRIES 1RM6, 1T3Q, 1FFU, 1FFV experimental model PDB 1T3Q PDB ENTRIES 1RM6, 1T3Q, 1FFU, 1FFV experimental model PDB 1FFU PDB ENTRIES 1RM6, 1T3Q, 1FFU, 1FFV experimental model PDB 1FFV PDB ENTRIES 1RM6, 1T3Q, 1FFU, 1FFV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 PEG 3350, AMMONIUM IODIDE, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.39 48.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.681 α = 90 b = 78.342 β = 99.69 c = 151.909 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 48.32 98.5 0.11 9.69 4.4 137342 1.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 99 0.86 1.9 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1RM6, 1T3Q, 1FFU, 1FFV 1.7 48.32 130506 6835 98.52 0.13988 0.13848 0.1532 0.16745 0.1791 RANDOM 20.871
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 0.1 -0.27 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.767 r_dihedral_angle_4_deg 17.756 r_dihedral_angle_3_deg 12.103 r_dihedral_angle_1_deg 6.24 r_angle_refined_deg 2.046 r_scbond_it 1.483 r_mcangle_it 1.426 r_angle_other_deg 1.299 r_mcbond_it 0.912 r_mcbond_other 0.874
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.767 r_dihedral_angle_4_deg 17.756 r_dihedral_angle_3_deg 12.103 r_dihedral_angle_1_deg 6.24 r_angle_refined_deg 2.046 r_scbond_it 1.483 r_mcangle_it 1.426 r_angle_other_deg 1.299 r_mcbond_it 0.912 r_mcbond_other 0.874 r_chiral_restr 0.103 r_bond_refined_d 0.02 r_gen_planes_refined 0.02 r_gen_planes_other 0.015 r_bond_other_d 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9136 Nucleic Acid Atoms Solvent Atoms 981 Heterogen Atoms 188
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing