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X-ray structure of PI3Kinase Gamma in complex with Copanlisib
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 19% PEG4000,0.15M (NH4)2SO4, 0.1M TRIS PH7.5
Crystal Properties Matthews coefficient Solvent content 2.46 50.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.762 α = 90 b = 68.336 β = 95.11 c = 106.472 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PILATUS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.68 61.78 96.6 0.08 2.5 29372 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.68 2.83 97.5 0.67 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NONE 2.68 61.78 26776 1410 95.95 0.21512 0.21142 0.2112 0.28454 0.2844 RANDOM 70.627
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.55 2 -5.58 0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.045 r_dihedral_angle_3_deg 18.971 r_dihedral_angle_4_deg 18.037 r_dihedral_angle_1_deg 7.547 r_mcangle_it 2.213 r_angle_refined_deg 1.909 r_mcbond_it 1.314 r_mcbond_other 1.314 r_scbond_it 1.303 r_angle_other_deg 1.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.045 r_dihedral_angle_3_deg 18.971 r_dihedral_angle_4_deg 18.037 r_dihedral_angle_1_deg 7.547 r_mcangle_it 2.213 r_angle_refined_deg 1.909 r_mcbond_it 1.314 r_mcbond_other 1.314 r_scbond_it 1.303 r_angle_other_deg 1.078 r_chiral_restr 0.098 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6659 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling