☰ Navigation Tabs
Crystal structure of sterol 14-alpha demethylase (CYP51B) from a pathogenic filamentous fungus Aspergillus fumigatus in complex with a tetrazole-based inhibitor VT-1598
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4UHL PDB ENTRY 4UHL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 pH 7.4
Crystal Properties Matthews coefficient Solvent content 2.77 55.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.857 α = 90 b = 109.857 β = 90 c = 84.838 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH BE LENSES DIAMOND LAUE 2015-09-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.99 95.15 99.7 0.03 26.1 5.4 12238 2 116.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.99 3.07 100 0.65 1.9 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4UHL 2.99 95.14 11467 674 99.22 0.25955 0.25839 0.2573 0.28006 0.2594 RANDOM 153.732
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.09 0.19 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.394 r_mcangle_it 20.414 r_dihedral_angle_3_deg 14.802 r_mcbond_other 14.547 r_mcbond_it 14.544 r_scbond_it 14.302 r_dihedral_angle_4_deg 14.14 r_dihedral_angle_1_deg 5.799 r_angle_refined_deg 0.754 r_angle_other_deg 0.526
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.394 r_mcangle_it 20.414 r_dihedral_angle_3_deg 14.802 r_mcbond_other 14.547 r_mcbond_it 14.544 r_scbond_it 14.302 r_dihedral_angle_4_deg 14.14 r_dihedral_angle_1_deg 5.799 r_angle_refined_deg 0.754 r_angle_other_deg 0.526 r_chiral_restr 0.047 r_gen_planes_refined 0.007 r_bond_refined_d 0.005 r_gen_planes_other 0.002 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3752 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling PHASER phasing