5FLE

High resolution NI,FE-CODH-320 mV with CN state


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1815% PEG 3350, 0.2 M AMMONIUM SULFATE, 0.1 M BIS-TRIS PH 6.5,
Crystal Properties
Matthews coefficientSolvent content
239

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 112.216α = 90
b = 75.511β = 111.53
c = 71.132γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.1BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.2340.7699.40.0614.553.71594302
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.231.2498.50.62

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3B531.2366.17151457797299.480.12270.121080.15321RANDOM17.613
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.321.27-0.49-0.63
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free59.518
r_dihedral_angle_2_deg36.919
r_dihedral_angle_4_deg19.485
r_sphericity_bonded16.56
r_dihedral_angle_3_deg12.218
r_rigid_bond_restr8.091
r_long_range_B_refined6.627
r_dihedral_angle_1_deg6.135
r_scangle_other6.068
r_long_range_B_other5.75
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free59.518
r_dihedral_angle_2_deg36.919
r_dihedral_angle_4_deg19.485
r_sphericity_bonded16.56
r_dihedral_angle_3_deg12.218
r_rigid_bond_restr8.091
r_long_range_B_refined6.627
r_dihedral_angle_1_deg6.135
r_scangle_other6.068
r_long_range_B_other5.75
r_scbond_it5.626
r_scbond_other5.624
r_mcangle_other2.633
r_mcangle_it2.631
r_mcbond_it2.403
r_mcbond_other2.384
r_angle_refined_deg1.94
r_angle_other_deg1.452
r_chiral_restr0.139
r_bond_refined_d0.017
r_gen_planes_refined0.013
r_gen_planes_other0.003
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4653
Nucleic Acid Atoms
Solvent Atoms678
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing