5F81

Acoustic injectors for drop-on-demand serial femtosecond crystallography


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE4.6295Batch crystallization 120 mg/ml dissolved in 0.1M sodium acetate (4.6), crystallized with 6% sodium chloride + 10% v/v glycerol
Crystal Properties
Matthews coefficientSolvent content
2.0239.17

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.504α = 90
b = 78.504β = 90
c = 37.618γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray295PIXELCS-PAD XPP2013-06-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1FREE ELECTRON LASERSLAC LCLS BEAMLINE XPP1.36SLAC LCLSXPP

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1355.5199.8414.715.66590
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.132.2499.74.57.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4ET82.1355.51659036199.840.247060.242330.33255RANDOM18.063
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.41-0.410.82
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.466
r_dihedral_angle_3_deg18.795
r_dihedral_angle_4_deg9.614
r_dihedral_angle_1_deg7.998
r_long_range_B_refined4.283
r_long_range_B_other4.035
r_angle_refined_deg1.603
r_scangle_other1.565
r_mcangle_it1.509
r_mcangle_other1.508
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.466
r_dihedral_angle_3_deg18.795
r_dihedral_angle_4_deg9.614
r_dihedral_angle_1_deg7.998
r_long_range_B_refined4.283
r_long_range_B_other4.035
r_angle_refined_deg1.603
r_scangle_other1.565
r_mcangle_it1.509
r_mcangle_other1.508
r_scbond_it0.97
r_scbond_other0.966
r_angle_other_deg0.904
r_mcbond_it0.904
r_mcbond_other0.902
r_chiral_restr0.091
r_bond_refined_d0.012
r_bond_other_d0.006
r_gen_planes_refined0.006
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1001
Nucleic Acid Atoms
Solvent Atoms154
Heterogen Atoms6

Software

Software
Software NamePurpose
REFMACrefinement
cctbx.xfeldata reduction
cctbx.xfeldata scaling
MOLREPphasing