☰ Navigation Tabs
Acoustic injectors for drop-on-demand serial femtosecond crystallography
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ET8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 4.6 295 Batch crystallization 120 mg/ml dissolved in 0.1M sodium acetate (4.6), crystallized with 6% sodium chloride + 10% v/v glycerol
Crystal Properties Matthews coefficient Solvent content 2.02 39.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.504 α = 90 b = 78.504 β = 90 c = 37.618 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 PIXEL CS-PAD XPP 2013-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 FREE ELECTRON LASER SLAC LCLS BEAMLINE XPP 1.36 SLAC LCLS XPP
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.13 55.51 99.84 14.7 15.6 6590
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.13 2.24 99.7 4.5 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4ET8 2.13 55.51 6590 361 99.84 0.24706 0.24233 0.2451 0.33255 0.3337 RANDOM 18.063
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 -0.41 0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.466 r_dihedral_angle_3_deg 18.795 r_dihedral_angle_4_deg 9.614 r_dihedral_angle_1_deg 7.998 r_long_range_B_refined 4.283 r_long_range_B_other 4.035 r_angle_refined_deg 1.603 r_scangle_other 1.565 r_mcangle_it 1.509 r_mcangle_other 1.508
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.466 r_dihedral_angle_3_deg 18.795 r_dihedral_angle_4_deg 9.614 r_dihedral_angle_1_deg 7.998 r_long_range_B_refined 4.283 r_long_range_B_other 4.035 r_angle_refined_deg 1.603 r_scangle_other 1.565 r_mcangle_it 1.509 r_mcangle_other 1.508 r_scbond_it 0.97 r_scbond_other 0.966 r_angle_other_deg 0.904 r_mcbond_it 0.904 r_mcbond_other 0.902 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement cctbx.xfel data reduction cctbx.xfel data scaling MOLREP phasing