5EVY

Salicylate hydroxylase substrate complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.5293ammonium sulfate, lithium sulfate, Tris-HCl
Crystal Properties
Matthews coefficientSolvent content
3.8568.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 142.33α = 90
b = 142.33β = 90
c = 62.35γ = 120
Symmetry
Space GroupP 64

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDBRUKER SMART 65002015-01-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL44XU0.9SPring-8BL44XU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4743.831000.105129.626083
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.472.61002.27.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.4737.3224736132499.950.203850.200840.26017RANDOM66.152
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.02-0.01-0.020.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.915
r_dihedral_angle_4_deg18.367
r_dihedral_angle_3_deg17.996
r_long_range_B_refined12.044
r_long_range_B_other12.04
r_scangle_other8.274
r_dihedral_angle_1_deg7.862
r_mcangle_it7.704
r_mcangle_other7.703
r_scbond_it5.439
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.915
r_dihedral_angle_4_deg18.367
r_dihedral_angle_3_deg17.996
r_long_range_B_refined12.044
r_long_range_B_other12.04
r_scangle_other8.274
r_dihedral_angle_1_deg7.862
r_mcangle_it7.704
r_mcangle_other7.703
r_scbond_it5.439
r_scbond_other5.428
r_mcbond_it5.244
r_mcbond_other5.236
r_angle_refined_deg1.757
r_angle_other_deg0.876
r_chiral_restr0.094
r_bond_refined_d0.014
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3119
Nucleic Acid Atoms
Solvent Atoms68
Heterogen Atoms53

Software

Software
Software NamePurpose
REFMACrefinement
Cootmodel building
MOSFLMdata collection
SCALAdata scaling