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Horse Serum Albumin (ESA) in complex with Cetirizine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3V08
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 289 1 ul of 30 mg/mL protein in 10 mM Tris pH 7.5, 150 mM NaCl was mixed with 1ul of the well condition: 100 mM Tris pH 7.5, 1800 mM (NH4)2SO4, 87.5 mM NaBr, 2.5% w/v PEG 8K
Crystal Properties Matthews coefficient Solvent content 2.78 55.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.234 α = 90 b = 94.234 β = 90 c = 141.893 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Bimorph K-B pair 2011-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.979 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 80 99.8 0.07 0.07 0.073 0.027 9.7 7.7 38645 43
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.19 100 0.947 0.363 0.785 7.7 1923
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3V08 2.15 80 36754 1879 99.79 0.1912 0.1888 0.1918 0.2407 0.2398 RANDOM 55.868
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.55 0.78 1.55 -5.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.701 r_dihedral_angle_4_deg 17.921 r_dihedral_angle_3_deg 13.551 r_dihedral_angle_1_deg 5.021 r_mcangle_it 2.101 r_angle_refined_deg 1.401 r_mcbond_it 1.325 r_mcbond_other 1.325 r_angle_other_deg 1.014 r_chiral_restr 0.081
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.701 r_dihedral_angle_4_deg 17.921 r_dihedral_angle_3_deg 13.551 r_dihedral_angle_1_deg 5.021 r_mcangle_it 2.101 r_angle_refined_deg 1.401 r_mcbond_it 1.325 r_mcbond_other 1.325 r_angle_other_deg 1.014 r_chiral_restr 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4488 Nucleic Acid Atoms Solvent Atoms 248 Heterogen Atoms 124
Software Software Software Name Purpose MD2 data collection HKL-3000 data reduction DENZO data reduction SCALEPACK data scaling MOLREP phasing Coot model building REFMAC refinement PDB_EXTRACT data extraction