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LokiProfilin2/Rabbit Actin Complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5YEE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 100 mM PCTP
25% PEG1500
Crystal Properties Matthews coefficient Solvent content 2.61 52.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.85 α = 90 b = 123.3 β = 96.9 c = 88.24 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2017-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 61.7 99.3 0.117 0.139 0.073 0.961 10.9 3.5 50253
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 97.2 0.292 0.346 0.185 0.899 3.4 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5YEE 2.3 61.65 47691 2562 98.93 0.22993 0.22753 0.2317 0.27448 0.2763 RANDOM 32.106
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 -0.01 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.826 r_dihedral_angle_3_deg 15.301 r_dihedral_angle_4_deg 14.572 r_dihedral_angle_1_deg 6.12 r_long_range_B_refined 4.996 r_long_range_B_other 4.945 r_angle_refined_deg 1.484 r_angle_other_deg 0.97 r_mcangle_it 0.183 r_mcangle_other 0.183
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.826 r_dihedral_angle_3_deg 15.301 r_dihedral_angle_4_deg 14.572 r_dihedral_angle_1_deg 6.12 r_long_range_B_refined 4.996 r_long_range_B_other 4.945 r_angle_refined_deg 1.484 r_angle_other_deg 0.97 r_mcangle_it 0.183 r_mcangle_other 0.183 r_scangle_other 0.12 r_mcbond_it 0.099 r_mcbond_other 0.099 r_chiral_restr 0.081 r_scbond_it 0.064 r_scbond_other 0.064 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7769 Nucleic Acid Atoms Solvent Atoms 478 Heterogen Atoms 118
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction Aimless data scaling PHASER phasing