X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP829337.1% w/v PEG 5000 MME, 150 mM Tris pH 8.0, 40 mM magnesium sulphate.
Crystal Properties
Matthews coefficientSolvent content
2.2445

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.815α = 90
b = 53.815β = 90
c = 62.789γ = 90
Symmetry
Space GroupP 43

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray253PIXELDECTRIS EIGER X 4M2016-03-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE MASSIF-30.988ESRFMASSIF-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.41009918.794.1431770
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.421.47

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.4253.8231770170198.990.156830.155360.18482RANDOM23.694
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.560.56-1.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.74
r_dihedral_angle_4_deg22.652
r_dihedral_angle_3_deg13.629
r_long_range_B_refined6.878
r_long_range_B_other6.852
r_scangle_other5.798
r_dihedral_angle_1_deg5.737
r_scbond_other3.837
r_scbond_it3.815
r_mcangle_it3.386
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.74
r_dihedral_angle_4_deg22.652
r_dihedral_angle_3_deg13.629
r_long_range_B_refined6.878
r_long_range_B_other6.852
r_scangle_other5.798
r_dihedral_angle_1_deg5.737
r_scbond_other3.837
r_scbond_it3.815
r_mcangle_it3.386
r_mcangle_other3.386
r_angle_refined_deg2.297
r_mcbond_it2.228
r_mcbond_other2.217
r_angle_other_deg1.142
r_chiral_restr0.161
r_bond_refined_d0.023
r_gen_planes_refined0.012
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1426
Nucleic Acid Atoms
Solvent Atoms187
Heterogen Atoms34

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing