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Solution Structure of the DNA-Binding Domain of Rok
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-13C NOESY 1 mM 15N_13C Rok 90% H2O/10% D2O 50 mM NaCl mM 6.0 ambient bar 298 Bruker AVANCE 950 2 3D 1H-15N NOESY 1 mM 15N_13C Rok 90% H2O/10% D2O 50 mM NaCl mM 6.0 ambient bar 298 Bruker AVANCE 950
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 500 2 Bruker AVANCE 950
NMR Refinement Method Details Software simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria 20 structures for lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 2 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 3 chemical shift assignment SANE Duggan, Legge, Dyson & Wright 4 peak picking NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax