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co-factor free Transaminase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 22% PEG 3350, 0.4M magnesium formate, 0.1M sodium citrate pH 6.2
Crystal Properties Matthews coefficient Solvent content 2.22 44.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.279 α = 90 b = 95.305 β = 90 c = 123.027 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MAR CCD 130 mm 2010-05-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 1.000 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.8 41.6 6.8 59798
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 20 59798 3193 99.72 0.17983 0.17717 0.22998 0.221 RANDOM 24.006
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.927 r_dihedral_angle_4_deg 18.339 r_dihedral_angle_3_deg 15.161 r_dihedral_angle_1_deg 6.692 r_long_range_B_other 6.554 r_long_range_B_refined 6.55 r_scangle_other 4.768 r_scbond_it 3.17 r_scbond_other 3.168 r_mcangle_it 3.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.927 r_dihedral_angle_4_deg 18.339 r_dihedral_angle_3_deg 15.161 r_dihedral_angle_1_deg 6.692 r_long_range_B_other 6.554 r_long_range_B_refined 6.55 r_scangle_other 4.768 r_scbond_it 3.17 r_scbond_other 3.168 r_mcangle_it 3.005 r_mcangle_other 3.005 r_mcbond_it 2.103 r_mcbond_other 2.103 r_angle_refined_deg 1.896 r_angle_other_deg 1.099 r_chiral_restr 0.12 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6688 Nucleic Acid Atoms Solvent Atoms 612 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing