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Stapled-peptides tailored against initiation of translation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TPW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 295 0.2M Potassium Iodide, 0.1M MES/Imidazole pH6.5, 25%(wv) PEG4000
Crystal Properties Matthews coefficient Solvent content 2.21 45.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.35 α = 90 b = 68.17 β = 90 c = 111.01 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2017-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.983998 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.12 50 99.8 0.086 13.49 9.4 25155
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.12 2.25 0.617 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4TPW 2.12 43.89 23897 1258 99.79 0.21825 0.21552 0.2196 0.2699 0.2699 RANDOM 38.556
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.05 1.65 -0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.468 r_dihedral_angle_3_deg 13.753 r_dihedral_angle_4_deg 13.747 r_dihedral_angle_1_deg 6.392 r_long_range_B_refined 4.482 r_long_range_B_other 4.482 r_mcangle_it 2.764 r_mcangle_other 2.764 r_scangle_other 2.301 r_mcbond_it 1.576
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.468 r_dihedral_angle_3_deg 13.753 r_dihedral_angle_4_deg 13.747 r_dihedral_angle_1_deg 6.392 r_long_range_B_refined 4.482 r_long_range_B_other 4.482 r_mcangle_it 2.764 r_mcangle_other 2.764 r_scangle_other 2.301 r_mcbond_it 1.576 r_mcbond_other 1.576 r_angle_refined_deg 1.353 r_scbond_it 1.329 r_scbond_other 1.327 r_angle_other_deg 0.891 r_chiral_restr 0.07 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3083 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing