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Stapled-peptides tailored against initiation of translation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TPW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 295 30%(w/v) PEG6000, 0.1M Na-Hepes pH 6.5
Crystal Properties Matthews coefficient Solvent content 1.92 35.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.48 α = 90 b = 65.09 β = 90 c = 76.39 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2017-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.983998 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 50 99.4 0.079 16.11 8.7 9319
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.68 0.464 3.13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4TPW 2.25 50 8827 465 99.39 0.20176 0.19826 0.2047 0.26839 0.2681 RANDOM 36.924
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.21 -2.81 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.62 r_dihedral_angle_3_deg 15.725 r_dihedral_angle_4_deg 13.541 r_dihedral_angle_1_deg 6.929 r_long_range_B_refined 5.22 r_long_range_B_other 5.217 r_scangle_other 3.614 r_mcangle_it 3.105 r_mcangle_other 3.102 r_scbond_it 2.264
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.62 r_dihedral_angle_3_deg 15.725 r_dihedral_angle_4_deg 13.541 r_dihedral_angle_1_deg 6.929 r_long_range_B_refined 5.22 r_long_range_B_other 5.217 r_scangle_other 3.614 r_mcangle_it 3.105 r_mcangle_other 3.102 r_scbond_it 2.264 r_scbond_other 2.263 r_mcbond_it 1.941 r_mcbond_other 1.936 r_angle_refined_deg 1.748 r_angle_other_deg 1.295 r_chiral_restr 0.082 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1623 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing