5ZGG | pdb_00005zgg

NMR structure of p75NTR transmembrane domain in complex with NSC49652

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.8 mM [U-99% 13C; U-99% 15N] p75NTR TMD, 3.9 mM 4809F6, 100 mM [U-98% 2H] DPC, 5 % [U-99.9% 2H] DMSO	90% H2O/10% D2O	20 mM	6.0	1 atm	313	Bruker AVANCE 800
2	2D 1H-13C HSQC aliphatic	0.8 mM [U-99% 13C; U-99% 15N] p75NTR TMD, 3.9 mM 4809F6, 100 mM [U-98% 2H] DPC, 5 % [U-99.9% 2H] DMSO	90% H2O/10% D2O	20 mM	6.0	1 atm	313	Bruker AVANCE 800
3	2D 1H-13C HSQC aromatic	0.8 mM [U-99% 13C; U-99% 15N] p75NTR TMD, 3.9 mM 4809F6, 100 mM [U-98% 2H] DPC, 5 % [U-99.9% 2H] DMSO	90% H2O/10% D2O	20 mM	6.0	1 atm	313	Bruker AVANCE 800
4	3D HNCA	0.8 mM [U-99% 13C; U-99% 15N] p75NTR TMD, 3.9 mM 4809F6, 100 mM [U-98% 2H] DPC, 5 % [U-99.9% 2H] DMSO	90% H2O/10% D2O	20 mM	6.0	1 atm	313	Bruker AVANCE 800
5	3D HN(CO)CA	0.8 mM [U-99% 13C; U-99% 15N] p75NTR TMD, 3.9 mM 4809F6, 100 mM [U-98% 2H] DPC, 5 % [U-99.9% 2H] DMSO	90% H2O/10% D2O	20 mM	6.0	1 atm	313	Bruker AVANCE 800
6	3D HCCH-TOCSY	0.8 mM [U-99% 13C; U-99% 15N] p75NTR TMD, 3.9 mM 4809F6, 100 mM [U-98% 2H] DPC, 5 % [U-99.9% 2H] DMSO	90% H2O/10% D2O	20 mM	6.0	1 atm	313	Bruker AVANCE 800
7	2D TOCSY	0.8 mM [U-99% 13C; U-99% 15N] p75NTR TMD, 3.9 mM 4809F6, 100 mM [U-98% 2H] DPC, 5 % [U-99.9% 2H] DMSO	90% H2O/10% D2O	20 mM	6.0	1 atm	313	Bruker AVANCE 800
8	3D NOESY	0.8 mM [U-99% 13C; U-99% 15N] p75NTR TMD, 3.9 mM 4809F6, 100 mM [U-98% 2H] DPC, 5 % [U-99.9% 2H] DMSO	90% H2O/10% D2O	20 mM	6.0	1 atm	313	Bruker AVANCE 800
9	2D 1H-13C filtered NOESY	0.8 mM [U-99% 13C; U-99% 15N] p75NTR TMD, 3.9 mM 4809F6, 100 mM [U-98% 2H] DPC, 5 % [U-99.9% 2H] DMSO	90% H2O/10% D2O	20 mM	6.0	1 atm	313	Bruker AVANCE 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
molecular dynamics		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	chemical shift assignment	NMRView		Johnson, One Moon Scientific
3	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
4	peak picking	NMRView		Johnson, One Moon Scientific
5	refinement	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman