☰ Navigation Tabs
Crystal structure of KAI2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WOM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 290 1M Na-citrate, 100 mM HEPES (pH 7.5), 5% glycerol
Crystal Properties Matthews coefficient Solvent content 2.25 45.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.599 α = 90 b = 55.785 β = 116.07 c = 53.034 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93.1 IMAGE PLATE RIGAKU RAXIS IV 2012-03-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.987 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 50 99.7 54.1 6.1 43387
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.49 1.52
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1WOM 1.49 47.64 41150 2183 99.4 0.13854 0.13647 0.17662 0.1951 RANDOM 9.743
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.78 0.29 -0.55 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.565 r_dihedral_angle_4_deg 16.688 r_dihedral_angle_3_deg 12.472 r_sphericity_free 10.653 r_scangle_it 6.292 r_dihedral_angle_1_deg 5.778 r_scbond_it 4.611 r_sphericity_bonded 4.057 r_mcangle_it 2.976 r_rigid_bond_restr 2.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.565 r_dihedral_angle_4_deg 16.688 r_dihedral_angle_3_deg 12.472 r_sphericity_free 10.653 r_scangle_it 6.292 r_dihedral_angle_1_deg 5.778 r_scbond_it 4.611 r_sphericity_bonded 4.057 r_mcangle_it 2.976 r_rigid_bond_restr 2.314 r_mcbond_it 2.133 r_angle_refined_deg 1.929 r_angle_other_deg 1.14 r_mcbond_other 0.974 r_chiral_restr 0.159 r_bond_refined_d 0.023 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2066 Nucleic Acid Atoms Solvent Atoms 229 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing