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Crystal structure of alkaline/neutral invertase InvB from Anabaena sp. PCC 7120
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 289 0.7M lithium chloride, 6% polyethylene glycol 6000, 0.1M MES, pH 6.0
Crystal Properties Matthews coefficient Solvent content 2.71 54.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 166.637 α = 90 b = 82.384 β = 118.86 c = 94.829 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-03-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.97916 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 50 97.6 0.078 15.1 2.7 82269
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 2 98.9 0.505 2.3 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.93 31.41 78169 4096 97.49 0.2055 0.20431 0.2081 0.22767 0.2314 RANDOM 41.334
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.05 0.31 1.03 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.1 r_dihedral_angle_4_deg 14.618 r_dihedral_angle_3_deg 12.217 r_dihedral_angle_1_deg 4.612 r_long_range_B_refined 3.318 r_long_range_B_other 3.252 r_mcangle_it 1.963 r_mcangle_other 1.963 r_scangle_other 1.842 r_mcbond_it 1.128
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.1 r_dihedral_angle_4_deg 14.618 r_dihedral_angle_3_deg 12.217 r_dihedral_angle_1_deg 4.612 r_long_range_B_refined 3.318 r_long_range_B_other 3.252 r_mcangle_it 1.963 r_mcangle_other 1.963 r_scangle_other 1.842 r_mcbond_it 1.128 r_mcbond_other 1.128 r_scbond_it 1.056 r_scbond_other 1.056 r_angle_refined_deg 0.914 r_angle_other_deg 0.706 r_chiral_restr 0.054 r_bond_other_d 0.005 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6913 Nucleic Acid Atoms Solvent Atoms 287 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection