☰ Navigation Tabs
Crystal structure of ConA-R4M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 300 20% polyethylene glycol 6000, 20 mM HEPES, 100 mM NaCl, 5 mM CaCl2, 5 mM MnCl2 pH 7.2
Crystal Properties Matthews coefficient Solvent content 2.05 39.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.6 α = 90 b = 116.11 β = 90 c = 58.69 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-10-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.9716 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 39.9 99.7 23.8 6.7 34408
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.89 1.94
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.89 39 33322 1086 99.86 0.19077 0.18905 0.1985 0.24387 0.2512 RANDOM 35.681
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.61 2.29 -0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.481 r_dihedral_angle_4_deg 18.588 r_dihedral_angle_3_deg 15.975 r_dihedral_angle_1_deg 8.341 r_long_range_B_other 8.199 r_long_range_B_refined 8.196 r_scangle_other 5.869 r_mcangle_it 5.474 r_mcangle_other 5.473 r_scbond_it 3.963
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.481 r_dihedral_angle_4_deg 18.588 r_dihedral_angle_3_deg 15.975 r_dihedral_angle_1_deg 8.341 r_long_range_B_other 8.199 r_long_range_B_refined 8.196 r_scangle_other 5.869 r_mcangle_it 5.474 r_mcangle_other 5.473 r_scbond_it 3.963 r_scbond_other 3.962 r_mcbond_it 3.566 r_mcbond_other 3.563 r_angle_refined_deg 1.926 r_angle_other_deg 1.101 r_chiral_restr 0.115 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3618 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms 129
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing