5Z55

NMR Solution Structure of the Kringle domain of human receptor tyrosine kinase-like orphan receptor 1 (ROR1)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1HBHA(CO)NH0.8 mM 99%U-13C, U-15N ROR1Kr94% H2O/6% D2O150 mM8.01 atm298Bruker AvanceIII 600
2H(CCO)NH0.8 mM 99%U-13C, U-15N ROR1Kr94% H2O/6% D2O150 mM8.01 atm298Bruker AvanceIII 600
3C(CO)NH0.8 mM 99%U-13C, U-15N ROR1Kr94% H2O/6% D2O150 mM8.01 atm298Bruker AvanceIII 600
4CBCA (CO) NH0.8 mM 99%U-13C, U-15N ROR1Kr94% H2O/6% D2O150 mM8.01 atm298Bruker AvanceIII 600
5(Hali)CaliCaroHaro-TOCSY0.8 mM 99%U-13C, U-15N ROR1Kr94% H2O/6% D2O150 mM8.01 atm298Bruker AvanceIII 600
6HNCA0.8 mM 99%U-13C, U-15N ROR1Kr94% H2O/6% D2O150 mM8.01 atm298Bruker AvanceIII 800
153D HNCACB0.8 mM 99%U-13C, U-15N ROR1Kr94% H2O/6% D2O150 mM8.01 atm298Bruker AvanceIII 800
143D HNCO0.8 mM 99%U-13C, U-15N ROR1Kr94% H2O/6% D2O150 mM8.01 atm298Bruker AvanceIII 800
133D HCCH-TOCSY0.8 mM 99%U-13C, U-15N ROR1Kr94% H2O/6% D2O150 mM8.01 atm298Bruker AvanceIII 800
123D CCH-TOCSY0.8 mM 99%U-13C, U-15N ROR1Kr94% H2O/6% D2O150 mM8.01 atm298Bruker AvanceIII 800
112D 1H-15N HSQC0.8 mM 99%U-13C, U-15N ROR1Kr94% H2O/6% D2O150 mM8.01 atm298Bruker AvanceIII 800
102D 1H-13C CT-HSQC0.8 mM 99%U-13C, U-15N ROR1Kr94% H2O/6% D2O150 mM8.01 atm298Bruker AvanceIII 800
93D 1H-15N NOESY0.8 mM 99%U-13C, U-15N ROR1Kr94% H2O/6% D2O150 mM8.01 atm298Bruker AvanceIII 800
83D 1H-13C NOESY aliphatic0.8 mM 99%U-13C, U-15N ROR1Kr94% H2O/6% D2O150 mM8.01 atm298Bruker AvanceIII 800
73D 1H-13C NOESY aromatic0.8 mM 99%U-13C, U-15N ROR1Kr94% H2O/6% D2O150 mM8.01 atm298Bruker AvanceIII 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvanceIII600
2BrukerAvanceIII800
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number96
Conformers Submitted Total Number10
Representative Model1 (medoid)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
2collectionTOPSPINBruker Biospin
3processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5peak pickingSPARKYGoddard
1chemical shift assignmentPINEBahrami, Markley, Assadi, and Eghbalnia
4data analysisSPARKYGoddard
6structure calculationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore