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Crystal Structure Analysis of the BRD4(1)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 20% PEG 3350, 0.1M HEPES, 10% EtGhly, PH7.0
Crystal Properties Matthews coefficient Solvent content 1.93 36.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.08 α = 90 b = 47.09 β = 90 c = 78.17 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS 6M 2015-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL18U1 0.97776 SSRF BL18U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 78.17 99.8 0.089 0.093 0.027 0.999 13.4 11.3 25111
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.44 99.4 0.805 0.841 0.238 0.927 12
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.42 40.34 23841 1221 99.58 0.1816 0.1797 0.1889 0.2198 0.2258 RANDOM 19.856
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.88 -1.51 -1.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.281 r_dihedral_angle_4_deg 12.837 r_dihedral_angle_3_deg 12.579 r_dihedral_angle_1_deg 5.851 r_angle_refined_deg 1.954 r_angle_other_deg 1.067 r_chiral_restr 0.12 r_bond_refined_d 0.018 r_gen_planes_refined 0.012 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.281 r_dihedral_angle_4_deg 12.837 r_dihedral_angle_3_deg 12.579 r_dihedral_angle_1_deg 5.851 r_angle_refined_deg 1.954 r_angle_other_deg 1.067 r_chiral_restr 0.12 r_bond_refined_d 0.018 r_gen_planes_refined 0.012 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1111 Nucleic Acid Atoms Solvent Atoms 63 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction PDB_EXTRACT data extraction MOLREP phasing