5YZK | pdb_00005yzk

Solution structure of LysM domain from a chitinase derived from Volvox carteri

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	194 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate	90% H2O/10% D2O	20 mM	5.0	1 atm	300	Bruker AVANCE III 500
2	3D HNCO	194 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate	90% H2O/10% D2O	20 mM	5.0	1 atm	300	Bruker AVANCE III 500
3	3D HNCACO	194 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate	90% H2O/10% D2O	20 mM	5.0	1 atm	300	Bruker AVANCE III 500
4	3D CBCA(CO)NH	194 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate	90% H2O/10% D2O	20 mM	5.0	1 atm	300	Bruker AVANCE III 500
5	3D HNCACB	194 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate	90% H2O/10% D2O	20 mM	5.0	1 atm	300	Bruker AVANCE III 500
12	3D 1H-15N NOESY	359 uM [U-13C; U-15N] LysM, 20 mM [U-13C; U-15N] sodium acetate	100% D2O	20 mM	5.0	1 atm	300	Bruker AVANCE III 500
11	3D 1H-15N TOCSY	359 uM [U-13C; U-15N] LysM, 20 mM [U-13C; U-15N] sodium acetate	100% D2O	20 mM	5.0	1 atm	300	Bruker AVANCE III 500
14	3D HBHACBCACONH	359 uM [U-13C; U-15N] LysM, 20 mM [U-13C; U-15N] sodium acetate	100% D2O	20 mM	5.0	1 atm	300	Bruker AVANCE III 500
10	2D 1H-13C HSQC	287 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate	100% D2O	20 mM	5.0	1 atm	300	Bruker AVANCE III 500
9	3D 1H-13C NOESY aliphatic	287 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate	100% D2O	20 mM	5.0	1 atm	300	Bruker AVANCE III 500
8	3D 1H-13C NOESY aromatic	287 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate	100% D2O	20 mM	5.0	1 atm	300	Bruker AVANCE III 500
7	3D HCCH-TOCSY	287 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate	100% D2O	20 mM	5.0	1 atm	300	Bruker AVANCE III 500
6	3D CCH-TOCSY	287 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate	100% D2O	20 mM	5.0	1 atm	300	Bruker AVANCE III 500
13	2D DQF-COSY	287 uM [U-13C; U-15N] LysM, 20 mM [U-2H] sodium acetate	100% D2O	20 mM	5.0	1 atm	300	Bruker AVANCE III 500

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	500

NMR Refinement
Method	Details	Software
simulated annealing		CYANA

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (target function)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin		Bruker Biospin
2	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	processing	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4	peak picking	Sparky		Goddard
7	chemical shift assignment	Sparky		Goddard
6	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
5	refinement	CYANA		Guntert, Mumenthaler and Wuthrich