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crystal structure of circularly permutated Azurin 3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 0.08 M NaOAc, 0.24 M LiNO3, 0.24 M CaCl2, 20% polyethylene glycol 8000
Crystal Properties Matthews coefficient Solvent content 2.37 48.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.888 α = 90 b = 87.968 β = 110.22 c = 66.096 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2017-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 1 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 62.02 99.5 48.4 7.4 62796
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.66 1.69
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.66 62.02 59724 3046 99.3 0.16447 0.16182 0.1726 0.21659 0.2258 RANDOM 25.492
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.83 0.24 -0.2 0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.664 r_sphericity_free 23.919 r_dihedral_angle_3_deg 14.574 r_dihedral_angle_4_deg 12.272 r_sphericity_bonded 9.766 r_dihedral_angle_1_deg 6.739 r_long_range_B_refined 4.083 r_long_range_B_other 3.795 r_scangle_other 3.715 r_scbond_it 3.178
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.664 r_sphericity_free 23.919 r_dihedral_angle_3_deg 14.574 r_dihedral_angle_4_deg 12.272 r_sphericity_bonded 9.766 r_dihedral_angle_1_deg 6.739 r_long_range_B_refined 4.083 r_long_range_B_other 3.795 r_scangle_other 3.715 r_scbond_it 3.178 r_scbond_other 3.151 r_mcangle_it 2.596 r_mcangle_other 2.596 r_mcbond_it 2.111 r_mcbond_other 2.11 r_rigid_bond_restr 1.361 r_angle_refined_deg 1.356 r_angle_other_deg 0.875 r_chiral_restr 0.078 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3981 Nucleic Acid Atoms Solvent Atoms 496 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing