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Solution NMR Structure and Backbone Dynamics of the Partially Disordered Arabidopsis thaliana Phloem Protein 16-1, A Putative mRNA Transporter
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 100 uM [U-99% 13C; U-99% 15N] Arabidopsis thaliana phloem protein 16-1 90% H2O/10% D2O 20 mM 4.2 1 atm 298 Bruker AVANCE III 800 2 3D HNCACB 100 uM [U-99% 13C; U-99% 15N] Arabidopsis thaliana phloem protein 16-1 90% H2O/10% D2O 20 mM 4.2 1 atm 298 Bruker AVANCE III 800 3 3D CBCA(CO)NH 100 uM [U-99% 13C; U-99% 15N] Arabidopsis thaliana phloem protein 16-1 90% H2O/10% D2O 20 mM 4.2 1 atm 298 Bruker AVANCE III 800 4 3D HBHA(CO)NH 100 uM [U-99% 13C; U-99% 15N] Arabidopsis thaliana phloem protein 16-1 90% H2O/10% D2O 20 mM 4.2 1 atm 298 Bruker AVANCE III 700 5 3D 1H-15N NOESY 100 uM [U-99% 13C; U-99% 15N] Arabidopsis thaliana phloem protein 16-1 90% H2O/10% D2O 20 mM 4.2 1 atm 298 Bruker AVANCE III 700 6 3D 1H-13C NOESY aliphatic 100 uM [U-99% 13C; U-99% 15N] Arabidopsis thaliana phloem protein 16-1 90% H2O/10% D2O 20 mM 4.2 1 atm 298 Bruker AVANCE III 700 7 3D HNCO 100 uM [U-99% 13C; U-99% 15N] Arabidopsis thaliana phloem protein 16-1 90% H2O/10% D2O 20 mM 4.2 1 atm 298 Bruker AVANCE III 800 8 3D HNCA 100 uM [U-99% 13C; U-99% 15N] Arabidopsis thaliana phloem protein 16-1 90% H2O/10% D2O 20 mM 4.2 1 atm 298 Bruker AVANCE III 800 9 3D HN(CO)CA 100 uM [U-99% 13C; U-99% 15N] Arabidopsis thaliana phloem protein 16-1 90% H2O/10% D2O 20 mM 4.2 1 atm 298 Bruker AVANCE III 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 800 2 Bruker AVANCE III 700
NMR Refinement Method Details Software simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CYANA Guntert, Mumenthaler and Wuthrich 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 chemical shift assignment XEASY Bartels et al. 4 peak picking XEASY Bartels et al. 5 collection TopSpin Bruker Biospin 6 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 7 data analysis Sparky Goddard