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Structural basis for GTP hydrolysis and conformational change of mitofusin 1 in mediating mitochondrial fusion
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289 160mM potassium
thiocyanate, 16% PEG3350, 1% tacsimate (pH 7.0), 20mM HEPES, 2% PEG5000,
4% 1-propanol
Crystal Properties Matthews coefficient Solvent content 4.74 74.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 207.942 α = 90 b = 207.942 β = 90 c = 107.893 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2016-10-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.9785 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 50 100 14.33 19.7 44371
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.2 50 38433 1941 90.86 0.22429 0.22265 0.2224 0.25733 0.2561 RANDOM 78.655
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.07 -0.14 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.145 r_dihedral_angle_4_deg 17.465 r_dihedral_angle_3_deg 17.235 r_long_range_B_refined 13.283 r_long_range_B_other 13.279 r_scangle_other 9.014 r_mcangle_it 8.398 r_mcangle_other 8.398 r_dihedral_angle_1_deg 6.994 r_scbond_it 5.779
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.145 r_dihedral_angle_4_deg 17.465 r_dihedral_angle_3_deg 17.235 r_long_range_B_refined 13.283 r_long_range_B_other 13.279 r_scangle_other 9.014 r_mcangle_it 8.398 r_mcangle_other 8.398 r_dihedral_angle_1_deg 6.994 r_scbond_it 5.779 r_scbond_other 5.77 r_mcbond_it 5.456 r_mcbond_other 5.452 r_angle_refined_deg 1.537 r_angle_other_deg 1.017 r_chiral_restr 0.093 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9329 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 102
Software Software Software Name Purpose REFMAC refinement XDS data reduction autoPROC data scaling