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Strcutrue of the full-length CcmR complexed with 2-OG from Synechocystis PCC6803
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 289 0.2 M sodium citrate tribasicdihydrate, 0.1 M HEPES, pH 7.5, 20% (v/v) isopropanol
Crystal Properties Matthews coefficient Solvent content 3 59.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.766 α = 90 b = 109.16 β = 90 c = 178.226 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.97906 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 95.3 36.1 4.8 52491
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.63 97.5 3.3 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.6 50 49800 2632 94.86 0.19881 0.19691 0.2024 0.23374 0.2368 RANDOM 79.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 9.24 -2.32 -6.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.146 r_dihedral_angle_4_deg 16.242 r_dihedral_angle_3_deg 15.332 r_long_range_B_other 14.103 r_long_range_B_refined 14.102 r_scangle_other 11.331 r_mcangle_it 9.92 r_mcangle_other 9.919 r_scbond_it 7.926 r_scbond_other 7.827
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.146 r_dihedral_angle_4_deg 16.242 r_dihedral_angle_3_deg 15.332 r_long_range_B_other 14.103 r_long_range_B_refined 14.102 r_scangle_other 11.331 r_mcangle_it 9.92 r_mcangle_other 9.919 r_scbond_it 7.926 r_scbond_other 7.827 r_mcbond_it 7.107 r_mcbond_other 7.104 r_dihedral_angle_1_deg 6.44 r_angle_refined_deg 1.758 r_angle_other_deg 1.051 r_chiral_restr 0.092 r_bond_refined_d 0.016 r_bond_other_d 0.007 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9634 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing