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Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain MF66
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3.5 299 0.1M Citric acid, pH 3.5, 3.0M NaCl
Crystal Properties Matthews coefficient Solvent content 2.8 56.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.44 α = 90 b = 87.44 β = 90 c = 60.6 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2008-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 75.73 99.8 0.15 0.073 0.993 8.9 5.9 8464
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 75.73 8459 430 99.55 0.2362 0.2348 0.2236 0.2627 0.2592 RANDOM 51.4056
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.28 0.64 1.28 -4.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.715 r_dihedral_angle_4_deg 27.882 r_dihedral_angle_3_deg 21.715 r_mcangle_it 9.189 r_mcbond_it 6.945 r_mcbond_other 6.924 r_dihedral_angle_1_deg 4.371 r_angle_other_deg 3.449 r_angle_refined_deg 1.229 r_chiral_restr 0.068
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.715 r_dihedral_angle_4_deg 27.882 r_dihedral_angle_3_deg 21.715 r_mcangle_it 9.189 r_mcbond_it 6.945 r_mcbond_other 6.924 r_dihedral_angle_1_deg 4.371 r_angle_other_deg 3.449 r_angle_refined_deg 1.229 r_chiral_restr 0.068 r_bond_refined_d 0.012 r_gen_planes_other 0.011 r_gen_planes_refined 0.005 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1462 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement iMOSFLM data processing Aimless data reduction Aimless data scaling PHASER phasing