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A BPTI-[5,55] variant with C14GA38G mutations
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZVX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293.15 30% PEG4000; 0.2M Lithium Sulfate; 0.1M Tris-HCl, pH8.5
Crystal Properties Matthews coefficient Solvent content 2.14 42.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 25.125 α = 90 b = 41.097 β = 100.21 c = 54.739 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 101 CCD AGILENT ATLAS CCD 2010-04-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.0 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 53.87 99 4.32 3.5 44641
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.13 99.9 0.328 0.328 5.04 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2ZVX 1.12 53.87 40751 2170 96.13 0.15741 0.15548 0.1645 0.19312 0.1999 RANDOM 10.819
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 0.18 -0.23 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.654 r_sphericity_free 20.905 r_sphericity_bonded 11.69 r_dihedral_angle_3_deg 11.543 r_dihedral_angle_4_deg 10.194 r_dihedral_angle_1_deg 7.254 r_rigid_bond_restr 7.224 r_long_range_B_refined 4.251 r_long_range_B_other 2.54 r_angle_refined_deg 2.278
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.654 r_sphericity_free 20.905 r_sphericity_bonded 11.69 r_dihedral_angle_3_deg 11.543 r_dihedral_angle_4_deg 10.194 r_dihedral_angle_1_deg 7.254 r_rigid_bond_restr 7.224 r_long_range_B_refined 4.251 r_long_range_B_other 2.54 r_angle_refined_deg 2.278 r_scbond_it 2.054 r_scangle_other 2.02 r_scbond_other 2.013 r_mcbond_it 1.397 r_mcangle_other 1.299 r_mcangle_it 1.267 r_mcbond_other 1.154 r_angle_other_deg 1.047 r_chiral_restr 0.162 r_bond_refined_d 0.024 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 891 Nucleic Acid Atoms Solvent Atoms 287 Heterogen Atoms 20
Software Software Software Name Purpose SHELXL data collection DENZO data reduction SCALA data scaling REFMAC refinement