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Crystal structure of lpg1832, a VirK family protein from Legionella pneumophila
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 277 0.2 M Lithium sulfate monohydrate, 0.1 M Bis-Tris pH 5.5, 25% w Polyethylene glycol 3,350
Crystal Properties Matthews coefficient Solvent content 2.26 45.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.2 α = 90 b = 74.84 β = 90 c = 85.15 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.97911 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 85 93.3 10.7 10.5 30567
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 30 28974 1525 93.22 0.22025 0.21824 0.23 0.2601 0.2707 RANDOM 36.851
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.48 -1.17 2.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.169 r_dihedral_angle_4_deg 19.96 r_dihedral_angle_3_deg 17.261 r_long_range_B_refined 7.873 r_long_range_B_other 7.827 r_dihedral_angle_1_deg 6.064 r_scangle_other 5.51 r_mcangle_it 4.263 r_mcangle_other 4.263 r_angle_other_deg 3.748
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.169 r_dihedral_angle_4_deg 19.96 r_dihedral_angle_3_deg 17.261 r_long_range_B_refined 7.873 r_long_range_B_other 7.827 r_dihedral_angle_1_deg 6.064 r_scangle_other 5.51 r_mcangle_it 4.263 r_mcangle_other 4.263 r_angle_other_deg 3.748 r_scbond_it 3.44 r_scbond_other 3.439 r_mcbond_it 2.606 r_mcbond_other 2.605 r_angle_refined_deg 1.734 r_chiral_restr 0.091 r_bond_refined_d 0.019 r_gen_planes_other 0.008 r_gen_planes_refined 0.007 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3660 Nucleic Acid Atoms Solvent Atoms 261 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AutoSol phasing