5XND | pdb_00005xnd

Solution structure of the major fish allergen parvalbumin Sco j 1 derived from the Pacific mackerel


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Bruker AVANCE III HD 800
22D 1H-13C HSQC aliphatic0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Bruker AVANCE III HD 800
32D 1H-13C HSQC aromatic0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Varian UNITY 500
43D HNCO0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Varian UNITY 600
53D HN(CO)CA0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Varian UNITY 600
63D HNCA0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Varian UNITY 600
73D CBCA(CO)NH0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Varian UNITY 600
83D HNCACB0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Varian UNITY 600
93D C(CO)NH0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Varian UNITY 600
103D HBHA(CO)NH0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Varian UNITY 600
113D HN(CA)HA0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Varian UNITY 600
123D 1H-15N NOESY0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Bruker AVANCE III HD 800
133D 3D HCCH-TOCSY aliphatic0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Bruker AVANCE III HD 800
143D 1H-13C NOESY aliphatic0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Bruker AVANCE III HD 800
152D HbCbCgCdHd0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Bruker AVANCE III HD 800
162D HbCbCgCdCeHe0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Bruker AVANCE III HD 800
173D 1H-13C NOESY aromatic0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Varian UNITY 500
183D HCCH-TOCSY aromatic0.5 mM [U-13C; U-15N] Sco j 1, 7 % [U-2H] D2O, 20 mM MES, 150 mM sodium chloride, 10 mM CaCl293% H2O/7% D2O180 mM6.81 atm298Varian UNITY 500
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III HD800
2VarianUNITY600
3VarianUNITY500
NMR Refinement
MethodDetailsSoftware
simulated annealingCYANA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR6.1CVarian
2collectionTopSpin3.2Bruker Biospin
3processingNMRPipe8.2Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4chemical shift assignmentSparky3.113Goddard
5data analysisTALOS+3.80F1Shen, Delaglio, Cornilescu, Bax
6structure calculationCYANA2.1Guntert, Mumenthaler and Wuthrich