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Structural Insight of Flavonoids binding to CAG repeat RNA that causes Huntington's Disease (HD) and Spinocerebellar Ataxia (SCAs)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 1.54 mM RNA (5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3'), 3.08 mM MYC 90% H2O/10% D2O 10 mM 7.2 760 mmHg 300 Bruker AVANCE III 500 2 2D 1H-13C HSQC 1.54 mM RNA (5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3'), 3.08 mM MYC 90% H2O/10% D2O 10 mM 7.2 760 mmHg 300 Bruker AVANCE III 500
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 500
NMR Refinement Method Details Software simulated annealing 9 intermolecular restrainst Discover
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment TopSpin 3.1 Bruker Biospin 2 refinement Discover Accelrys Software Inc. 3 processing TopSpin Bruker Biospin 4 processing Sparky Goddard