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Staphylococcus aureus FtsZ 12-316 complexed with TXA707
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3VOA pdbid 3VOA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.6 293 100mM Tris-HCl, 41% w/v PEP629, 300mM KCl
Crystal Properties Matthews coefficient Solvent content 2.33 47.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.553 α = 90 b = 51.193 β = 108.68 c = 86.449 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300HE 2016-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.900 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 50 99.5 0.049 0.053 0.02 8.6 7 71548
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 100 0.76 0.823 0.311 0.841 6.9 3620
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdbid 3VOA 1.3 40.95 68064 3484 99.38 0.1377 0.1361 0.1357 0.1681 0.1667 RANDOM 25.435
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.926 r_sphericity_free 35.363 r_dihedral_angle_3_deg 13.191 r_sphericity_bonded 12.581 r_dihedral_angle_4_deg 11.583 r_rigid_bond_restr 11.365 r_dihedral_angle_1_deg 5.621 r_angle_other_deg 3.643 r_angle_refined_deg 1.746 r_chiral_restr 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.926 r_sphericity_free 35.363 r_dihedral_angle_3_deg 13.191 r_sphericity_bonded 12.581 r_dihedral_angle_4_deg 11.583 r_rigid_bond_restr 11.365 r_dihedral_angle_1_deg 5.621 r_angle_other_deg 3.643 r_angle_refined_deg 1.746 r_chiral_restr 0.09 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_gen_planes_other 0.006 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2211 Nucleic Acid Atoms Solvent Atoms 304 Heterogen Atoms 69
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data scaling PHASER phasing PDB_EXTRACT data extraction HKL data reduction