X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP529821-22.5% PEG 8000, 0.1M MES-NaOH (pH 5.0), 0.2M calcium acetate, 5% MPD
Crystal Properties
Matthews coefficientSolvent content
2.5150.91

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 174.151α = 90
b = 174.151β = 90
c = 50.708γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4r2007-11-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE BL-6A1.000Photon FactoryBL-6A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.987.0898.10.07116.43.344285
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.9795.50.3592.534308

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.987.0842045223898.120.152570.150820.18471RANDOM22.125
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.061
r_dihedral_angle_3_deg12.223
r_dihedral_angle_4_deg7.467
r_dihedral_angle_1_deg6.129
r_long_range_B_refined3.898
r_angle_other_deg3.865
r_long_range_B_other3.689
r_scangle_other2.517
r_scbond_it1.835
r_scbond_other1.835
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.061
r_dihedral_angle_3_deg12.223
r_dihedral_angle_4_deg7.467
r_dihedral_angle_1_deg6.129
r_long_range_B_refined3.898
r_angle_other_deg3.865
r_long_range_B_other3.689
r_scangle_other2.517
r_scbond_it1.835
r_scbond_other1.835
r_mcangle_other1.582
r_mcangle_it1.577
r_angle_refined_deg1.522
r_mcbond_it1.15
r_mcbond_other1.139
r_chiral_restr0.105
r_gen_planes_other0.018
r_bond_refined_d0.016
r_gen_planes_refined0.009
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4148
Nucleic Acid Atoms
Solvent Atoms510
Heterogen Atoms96

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
SOLVEphasing