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Crystal Structure of Human KMO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 295 0.1 M Tris (pH 8.5), 13% polyethylene glycol 4000, and 15% glycerol
Crystal Properties Matthews coefficient Solvent content 3.17 61.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 176.736 α = 90 b = 176.736 β = 90 c = 89.434 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 AREA DETECTOR ADSC QUANTUM 210 2012-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 1 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 88.37 96.5 0.06 0.063 25.6 3.9 55790
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 88.37 55790 2972 96.5 0.211 0.209 0.2136 0.256 0.2576 RANDOM 55.05
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.133 r_dihedral_angle_4_deg 21.292 r_dihedral_angle_3_deg 18.44 r_long_range_B_refined 7.505 r_long_range_B_other 7.492 r_dihedral_angle_1_deg 6.863 r_scangle_other 5.173 r_mcangle_it 4.329 r_mcangle_other 4.329 r_scbond_it 3.227
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.133 r_dihedral_angle_4_deg 21.292 r_dihedral_angle_3_deg 18.44 r_long_range_B_refined 7.505 r_long_range_B_other 7.492 r_dihedral_angle_1_deg 6.863 r_scangle_other 5.173 r_mcangle_it 4.329 r_mcangle_other 4.329 r_scbond_it 3.227 r_scbond_other 3.227 r_mcbond_it 2.831 r_mcbond_other 2.829 r_angle_refined_deg 0.666 r_angle_other_deg 0.498 r_chiral_restr 0.045 r_bond_refined_d 0.003 r_gen_planes_refined 0.001 r_bond_other_d r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5622 Nucleic Acid Atoms Solvent Atoms 131 Heterogen Atoms 106
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing