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Crystal structure of human TLR8 in complex with CU-CPT8m
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 PEG 4000, calcium chloride, Tris-HCl, ethylene glycol
Crystal Properties Matthews coefficient Solvent content 2.57 52.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.144 α = 90 b = 99.149 β = 108.07 c = 140.247 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 270 2016-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.0000 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99.7 30 3.5 144258
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.4 40.164 70051 3589 99.54 0.20343 0.20067 0.2063 0.25628 0.2576 RANDOM 59.575
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.412 r_dihedral_angle_4_deg 17.095 r_dihedral_angle_3_deg 16.443 r_long_range_B_other 10.396 r_long_range_B_refined 10.392 r_scangle_other 7.755 r_dihedral_angle_1_deg 7.193 r_mcangle_it 6.571 r_mcangle_other 6.571 r_scbond_it 5.104
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.412 r_dihedral_angle_4_deg 17.095 r_dihedral_angle_3_deg 16.443 r_long_range_B_other 10.396 r_long_range_B_refined 10.392 r_scangle_other 7.755 r_dihedral_angle_1_deg 7.193 r_mcangle_it 6.571 r_mcangle_other 6.571 r_scbond_it 5.104 r_scbond_other 5.103 r_mcbond_it 4.622 r_mcbond_other 4.614 r_angle_refined_deg 1.907 r_angle_other_deg 1.119 r_chiral_restr 0.099 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11995 Nucleic Acid Atoms Solvent Atoms 237 Heterogen Atoms 389
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing