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Using sound pulses to solve the crystal harvesting bottleneck
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FON
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 6.5 295 0.1 M BisTris pH 6.5, 0.08M CaCl2
Crystal Properties Matthews coefficient Solvent content 2.04 39.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.041 α = 90 b = 68.041 β = 90 c = 102.286 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2017-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS-II BEAMLINE 17-ID-1 0.97913 NSLS-II 17-ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 102.29 97.88 0.076 21.8 10.2 36472
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4fon 1.5 102.29 36472 1896 97.88 0.12528 0.12366 0.1226 0.15736 0.1568 RANDOM 8.694
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.004 r_dihedral_angle_4_deg 18.097 r_dihedral_angle_3_deg 11.519 r_long_range_B_refined 6.539 r_dihedral_angle_1_deg 6.343 r_long_range_B_other 5.495 r_scangle_other 3.006 r_angle_refined_deg 2.208 r_scbond_it 2.081 r_scbond_other 2.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.004 r_dihedral_angle_4_deg 18.097 r_dihedral_angle_3_deg 11.519 r_long_range_B_refined 6.539 r_dihedral_angle_1_deg 6.343 r_long_range_B_other 5.495 r_scangle_other 3.006 r_angle_refined_deg 2.208 r_scbond_it 2.081 r_scbond_other 2.06 r_mcangle_other 1.177 r_mcangle_it 1.175 r_angle_other_deg 1.038 r_mcbond_it 0.809 r_mcbond_other 0.791 r_chiral_restr 0.148 r_bond_refined_d 0.025 r_gen_planes_refined 0.013 r_bond_other_d 0.007 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2032 Nucleic Acid Atoms Solvent Atoms 480 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing