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Human TRPML1 channel structure in agonist-bound open conformation
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.073 r_long_range_B_refined 24.409 r_long_range_B_other 24.408 r_mcangle_it 15.168 r_mcangle_other 15.167 r_scangle_other 15.063 r_dihedral_angle_3_deg 14.769 r_mcbond_it 9.117 r_mcbond_other 9.117 r_dihedral_angle_4_deg 8.904
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.073 r_long_range_B_refined 24.409 r_long_range_B_other 24.408 r_mcangle_it 15.168 r_mcangle_other 15.167 r_scangle_other 15.063 r_dihedral_angle_3_deg 14.769 r_mcbond_it 9.117 r_mcbond_other 9.117 r_dihedral_angle_4_deg 8.904 r_scbond_it 8.765 r_scbond_other 8.764 r_dihedral_angle_1_deg 6.581 r_angle_refined_deg 1.137 r_angle_other_deg 0.929 r_chiral_restr 0.069 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name NITROGEN Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 56105 Reported Resolution (Å) 3.49 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 1.6
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version CTF CORRECTION CTFFIND4 RECONSTRUCTION FREALIGN
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION