Experiment: 5WB5

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.4	298	0.1 M Tris-HCl 3 % polyethylene glycol 400 2.125-2.175 M of ammonium sulfate.

Crystal Properties
Matthews coefficient	Solvent content
2.49	50.59

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 68.22	α = 90
b = 68.22	β = 90
c = 220.2	γ = 120

Symmetry
Space Group	P 62 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315r		2013-04-19	M	SINGLE WAVELENGTH
2	1	x-ray	100	CCD	ADSC QUANTUM 315r		2013-04-19	M	SINGLE WAVELENGTH
3	1	x-ray	100	CCD	ADSC QUANTUM 315r		2013-04-19	M	SINGLE WAVELENGTH
4	1	x-ray	100	CCD	ADSC QUANTUM 315r		2013-04-19	M	SINGLE WAVELENGTH
5	1	x-ray	100	CCD	ADSC QUANTUM 315r		2013-04-19	M	SINGLE WAVELENGTH
6	1	x-ray	100	CCD	ADSC QUANTUM 315r		2013-04-19	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALS BEAMLINE 8.2.2	0.999909	ALS	8.2.2
2	SYNCHROTRON	ALS BEAMLINE 8.2.2	0.999925	ALS	8.2.2
3	SYNCHROTRON	ALS BEAMLINE 8.2.2	0.999893	ALS	8.2.2
4	SYNCHROTRON	ALS BEAMLINE 8.2.2	0.999887	ALS	8.2.2
5	SYNCHROTRON	ALS BEAMLINE 8.2.2	0.999925	ALS	8.2.2
6	SYNCHROTRON	ALS BEAMLINE 8.2.2	0.999887	ALS	8.2.2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.7	36.7	99.8	0.133	0.134	0.999	37.1	64.813		9019

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.7	2.77	100		0.474	0.477	0.996	14.68	70.79

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Cut-off Sigma (F)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	TRUNCATED VERSION OF AN EIF4E, M7GTP, 4E-BP1 COMPLEX WITH PDB ID 1WKW	2.7	36.7	1.35	9015	439	99.83	0.2421	0.24	0.2827	66.2755

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
f_dihedral_angle_d	6.935
f_angle_d	0.484
f_chiral_restr	0.041
f_bond_d	0.003
f_plane_restr	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1650
Nucleic Acid Atoms
Solvent Atoms	21
Heterogen Atoms	17

Software

Software
Software Name	Purpose
PHENIX	refinement
XSCALE	data scaling
PDB_EXTRACT	data extraction
TRUNCATE	data reduction
PHASER	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.