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crystal structure of PARP14 bound to N-{4-[4-(diphenylmethoxy)piperidin-1-yl]butyl}[1,2,4]triazolo[4,3-b]pyridazin-6-amine inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 20% PEG3350, 0.2M Sodium-malonate, pH 7.2-7.8
Crystal Properties Matthews coefficient Solvent content 2.94 58.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.301 α = 90 b = 83.301 β = 90 c = 129.94 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 CCD ADSC QUANTUM 315 2014-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.1271 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 72.14 95.5 24.1 5.7 14218
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 88
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.3 72.14 11306 567 95.3 0.22139 0.22098 0.29097 0.3017 RANDOM 65.976
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.45 -1.22 -2.45 7.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.278 r_dihedral_angle_4_deg 19.454 r_dihedral_angle_3_deg 13.628 r_dihedral_angle_1_deg 5.755 r_long_range_B_refined 4.502 r_long_range_B_other 4.423 r_mcangle_it 2.599 r_mcangle_other 2.599 r_scangle_other 2.439 r_mcbond_it 1.627
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.278 r_dihedral_angle_4_deg 19.454 r_dihedral_angle_3_deg 13.628 r_dihedral_angle_1_deg 5.755 r_long_range_B_refined 4.502 r_long_range_B_other 4.423 r_mcangle_it 2.599 r_mcangle_other 2.599 r_scangle_other 2.439 r_mcbond_it 1.627 r_mcbond_other 1.625 r_scbond_it 1.552 r_scbond_other 1.485 r_angle_refined_deg 0.889 r_angle_other_deg 0.69 r_chiral_restr 0.058 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1406 Nucleic Acid Atoms Solvent Atoms 67 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing