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Crystal structure of citrate synthase from homo sapiens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.2 M Ammonium Acetate pH 7.1, 20% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.2 44.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.177 α = 62.78 b = 74.676 β = 93.85 c = 60.652 γ = 80.3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 1 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 40 96.15 0.078 0.078 0.123 0.083 10.3 2.1 35831 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 97.7 0.375 0.375 0.548 0.372 0.776 2.18 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 40 35831 1894 96.15 0.17245 0.17022 0.1766 0.21454 0.2171 RANDOM 26.323
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.88 0.1 0.92 -1.16 -0.03 1.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.62 r_dihedral_angle_4_deg 18.926 r_dihedral_angle_3_deg 14.286 r_dihedral_angle_1_deg 5.798 r_long_range_B_refined 3.939 r_long_range_B_other 3.897 r_scangle_other 2.558 r_mcangle_other 2.07 r_mcangle_it 2.069 r_angle_refined_deg 1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.62 r_dihedral_angle_4_deg 18.926 r_dihedral_angle_3_deg 14.286 r_dihedral_angle_1_deg 5.798 r_long_range_B_refined 3.939 r_long_range_B_other 3.897 r_scangle_other 2.558 r_mcangle_other 2.07 r_mcangle_it 2.069 r_angle_refined_deg 1.61 r_scbond_it 1.507 r_scbond_other 1.506 r_mcbond_it 1.208 r_mcbond_other 1.205 r_angle_other_deg 1.039 r_chiral_restr 0.097 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.006 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6852 Nucleic Acid Atoms Solvent Atoms 400 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing MOLREP phasing