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Crystal structure of 2-methylcitrate synthase from Aspergillus fumigatus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.2 M NaTartrate dibasic dihydrate, 20% PEG3350 pH 7.3
Crystal Properties Matthews coefficient Solvent content 2.65 53.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.548 α = 90 b = 116.333 β = 90 c = 153.816 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2013-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50.01 95.05 0.066 0.066 0.104 0.044 21.1 4.9 34715 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.54 92.4 0.59 0.59 0.724 0.318 0.806 2.04 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 40 34715 1830 95.05 0.19314 0.19106 0.1938 0.2331 0.2331 RANDOM 56.911
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.3 3.01 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.5 r_dihedral_angle_4_deg 20.161 r_dihedral_angle_3_deg 13.591 r_dihedral_angle_1_deg 5.657 r_long_range_B_refined 5.64 r_long_range_B_other 5.637 r_scangle_other 3.835 r_mcangle_it 3.352 r_mcangle_other 3.352 r_scbond_it 2.222
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.5 r_dihedral_angle_4_deg 20.161 r_dihedral_angle_3_deg 13.591 r_dihedral_angle_1_deg 5.657 r_long_range_B_refined 5.64 r_long_range_B_other 5.637 r_scangle_other 3.835 r_mcangle_it 3.352 r_mcangle_other 3.352 r_scbond_it 2.222 r_scbond_other 2.221 r_mcbond_it 1.974 r_mcbond_other 1.973 r_angle_refined_deg 1.602 r_angle_other_deg 1.024 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6759 Nucleic Acid Atoms Solvent Atoms 100 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling MOLREP phasing