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Critical role of water molecules for proton translocation of the membrane-bound transhydrogenase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIPIDIC CUBIC PHASE 6.5 293 1:1 60 mg/mL protein / 1-(8Z-pentadecenoyl)-rac-glycerol (mixed using a mechanical syringe mixer) in MAG 8.7 and precipitant (30% PEG400, 0.1 M MES, pH 6.5, 0.1-0.4 M magnesium nitrate, 1.0-2.5% benzamidine hydrochloride)
Crystal Properties Matthews coefficient Solvent content 3.37 63.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.858 α = 90 b = 108.936 β = 90 c = 109.338 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS 6M-F 2015-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.99 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 43.34 96 0.066 11.5 2.6 24963
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.2 43.34 23658 1311 95.66 0.18831 0.18637 0.1972 0.22343 0.2293 RANDOM 46.375
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 -0.06 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.893 r_dihedral_angle_4_deg 15.215 r_dihedral_angle_3_deg 13.746 r_long_range_B_other 13.425 r_long_range_B_refined 13.417 r_scangle_other 8.197 r_dihedral_angle_1_deg 5.711 r_mcangle_other 5.696 r_mcangle_it 5.695 r_scbond_it 5.626
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.893 r_dihedral_angle_4_deg 15.215 r_dihedral_angle_3_deg 13.746 r_long_range_B_other 13.425 r_long_range_B_refined 13.417 r_scangle_other 8.197 r_dihedral_angle_1_deg 5.711 r_mcangle_other 5.696 r_mcangle_it 5.695 r_scbond_it 5.626 r_scbond_other 5.624 r_mcbond_it 3.935 r_mcbond_other 3.93 r_angle_refined_deg 1.958 r_angle_other_deg 1.076 r_chiral_restr 0.12 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2607 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 159
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing