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Structure and function of the divalent anion/Na+ symporter from Vibrio cholerae and a humanized variant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 PEG, Na+, etc.
Crystal Properties Matthews coefficient Solvent content 4.74 74.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.694 α = 90 b = 101.918 β = 98.97 c = 167.755 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm 2015-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.0 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 100 99.9 21 13 82858
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.8 15 75407 3988 90.58 0.26085 0.26045 0.2685 0.27016 0.2766 RANDOM 88.876
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 11.87 11.12 -11.12 -2.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.967 r_dihedral_angle_4_deg 21.412 r_dihedral_angle_3_deg 18.638 r_long_range_B_refined 12.027 r_mcangle_it 6.232 r_dihedral_angle_1_deg 5.166 r_scbond_it 3.971 r_mcbond_it 3.666 r_angle_refined_deg 1.042 r_chiral_restr 0.071
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.967 r_dihedral_angle_4_deg 21.412 r_dihedral_angle_3_deg 18.638 r_long_range_B_refined 12.027 r_mcangle_it 6.232 r_dihedral_angle_1_deg 5.166 r_scbond_it 3.971 r_mcbond_it 3.666 r_angle_refined_deg 1.042 r_chiral_restr 0.071 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13348 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHARP phasing