5UCF | pdb_00005ucf

Solution NMR-derived model of the minor species of DANCER-2, a dynamic and natively folded pentamutant of the B1 domain of streptococcal protein G (GB1)

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D 1H-15N NOESY	200 uM [U-98% 15N] protein (GB1), 10 mM sodium phosphate, 100 uM EDTA, 0.02 % sodium azide	90% H2O/10% D2O	10 mM sodium phosphate mM	7.4	1 atm	298	Bruker AVANCE III HD 600
2	3D 1H-13C NOESY aliphatic	200 uM [U-99% 13C; U-98% 15N] protein (GB1), 10 mM sodium phosphate, 100 uM EDTA, 0.02 % sodium azide	100% D2O	10 mM sodium phosphate mM	7.4	1 atm	298	Bruker AVANCE III HD 600
3	3D 1H-13C NOESY aromatic	200 uM [U-99% 13C; U-98% 15N] protein (GB1), 10 mM sodium phosphate, 100 uM EDTA, 0.02 % sodium azide	100% D2O	10 mM sodium phosphate mM	7.4	1 atm	298	Bruker AVANCE III HD 600
4	3D HNCO	200 uM [U-99% 13C; U-98% 15N] protein (GB1), 10 mM sodium phosphate, 100 uM EDTA, 0.02 % sodium azide	90% H2O/10% D2O	10 mM sodium phosphate mM	7.4	1 atm	298	Bruker AVANCE III HD 600
5	3D HNCACB	200 uM [U-99% 13C; U-98% 15N] protein (GB1), 10 mM sodium phosphate, 100 uM EDTA, 0.02 % sodium azide	90% H2O/10% D2O	10 mM sodium phosphate mM	7.4	1 atm	298	Bruker AVANCE III HD 600
6	3D CBCA(CO)NH	200 uM [U-99% 13C; U-98% 15N] protein (GB1), 10 mM sodium phosphate, 100 uM EDTA, 0.02 % sodium azide	90% H2O/10% D2O	10 mM sodium phosphate mM	7.4	1 atm	298	Bruker AVANCE III HD 600
7	3D 1H-15N TOCSY	200 uM [U-98% 15N] protein (GB1), 10 mM sodium phosphate, 100 uM EDTA, 0.02 % sodium azide	90% H2O/10% D2O	10 mM sodium phosphate mM	7.4	1 atm	298	Bruker AVANCE III HD 600
8	3D CCH-TOCSY	200 uM [U-99% 13C; U-98% 15N] protein (GB1), 10 mM sodium phosphate, 100 uM EDTA, 0.02 % sodium azide	100% D2O	10 mM sodium phosphate mM	7.4	1 atm	298	Bruker AVANCE III HD 600
9	3D HCCH-TOCSY	200 uM [U-99% 13C; U-98% 15N] protein (GB1), 10 mM sodium phosphate, 100 uM EDTA, 0.02 % sodium azide	100% D2O	10 mM sodium phosphate mM	7.4	1 atm	298	Bruker AVANCE III HD 600
10	3D HCCH-COSY	200 uM [U-99% 13C; U-98% 15N] protein (GB1), 10 mM sodium phosphate, 100 uM EDTA, 0.02 % sodium azide	100% D2O	10 mM sodium phosphate mM	7.4	1 atm	298	Bruker AVANCE III HD 600
11	2D 1H-15N HSQC	200 uM [U-98% 15N] protein (GB1), 10 mM sodium phosphate, 100 uM EDTA, 0.02 % sodium azide	90% H2O/10% D2O	10 mM sodium phosphate mM	7.4	1 atm	298	Bruker AVANCE III HD 600
12	2D 1H-13C HSQC	200 uM [U-99% 13C; U-98% 15N] protein (GB1), 10 mM sodium phosphate, 100 uM EDTA, 0.02 % sodium azide	90% H2O/10% D2O	10 mM sodium phosphate mM	7.4	1 atm	298	Bruker AVANCE III HD 600
13	2D 1H-13C HSQC	200 uM [U-99% 13C; U-98% 15N] protein (GB1), 10 mM sodium phosphate, 100 uM EDTA, 0.02 % sodium azide	100% D2O	10 mM sodium phosphate mM	7.4	1 atm	298	Bruker AVANCE III HD 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III HD	600

NMR Refinement
Method	Details	Software
simulated annealing		CYANA

NMR Ensemble Information
Conformer Selection Criteria	10 structures for lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CYANA		Guntert, Mumenthaler and Wuthrich
2	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
3	chemical shift assignment	NMRView		Johnson, One Moon Scientific
4	peak picking	NMRView		Johnson, One Moon Scientific
6	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5	collection	TopSpin		Bruker Biospin

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.