5UA6 | pdb_00005ua6

Ocellatin-LB1, solution structure in SDS micelle by NMR spectroscopy

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	2 mM Ocellatin-LB1, 1 mM DSS, 400 mM d-25 SDS, 5 % 99.75 D2O	95% H2O/5% D2O	Null	4	Ambient	303.15	Bruker AVANCE III 800
2	2D 1H-1H TOCSY	2 mM Ocellatin-LB1, 1 mM DSS, 400 mM d-25 SDS, 5 % 99.75 D2O	95% H2O/5% D2O	Null	4	Ambient	303.15	Bruker AVANCE III 800
3	2D 1H-13C HSQC	2 mM Ocellatin-LB1, 1 mM DSS, 400 mM d-25 SDS, 5 % 99.75 D2O	95% H2O/5% D2O	Null	4	Ambient	303.15	Bruker AVANCE III 800
4	2D 1H-15N HMQC	2 mM Ocellatin-LB1, 1 mM DSS, 400 mM d-25 SDS, 5 % 99.75 D2O	95% H2O/5% D2O	Null	4	Ambient	303.15	Bruker AVANCE III 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	800

NMR Refinement
Method	Details	Software
simulated annealing	X-PLOR NIH	X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	XwinNMR		Bruker Biospin
2	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	chemical shift assignment	NMRView		Johnson, One Moon Scientific
4	data analysis	NMRView		Johnson, One Moon Scientific
5	geometry optimization	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
6	structure calculation	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
7	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
8	data analysis	MOLMOL		Koradi, Billeter and Wuthrich
9	data analysis	Procheck		Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton