5UA6
Ocellatin-LB1, solution structure in SDS micelle by NMR spectroscopy
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 2 mM Ocellatin-LB1, 1 mM DSS, 400 mM d-25 SDS, 5 % 99.75 D2O | 95% H2O/5% D2O | Null | 4 | Ambient | 303.15 | Bruker AvanceIII 800 |
2 | 2D 1H-1H TOCSY | 2 mM Ocellatin-LB1, 1 mM DSS, 400 mM d-25 SDS, 5 % 99.75 D2O | 95% H2O/5% D2O | Null | 4 | Ambient | 303.15 | Bruker AvanceIII 800 |
3 | 2D 1H-13C HSQC | 2 mM Ocellatin-LB1, 1 mM DSS, 400 mM d-25 SDS, 5 % 99.75 D2O | 95% H2O/5% D2O | Null | 4 | Ambient | 303.15 | Bruker AvanceIII 800 |
4 | 2D 1H-15N HMQC | 2 mM Ocellatin-LB1, 1 mM DSS, 400 mM d-25 SDS, 5 % 99.75 D2O | 95% H2O/5% D2O | Null | 4 | Ambient | 303.15 | Bruker AvanceIII 800 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AvanceIII | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | xwinnmr | Bruker Biospin | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
4 | data analysis | NMRView | Johnson, One Moon Scientific | |
5 | geometry optimization | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
6 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
7 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
8 | data analysis | Molmol | Koradi, Billeter and Wuthrich | |
9 | data analysis | Procheck | Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton |