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Crystal structure of Fe-CAO1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4OU9 MR-SAD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 281 Sodium polyacrylate, HEPES, pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.77 55.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.908 α = 90 b = 100.908 β = 90 c = 448.815 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 1.72200 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.165 50.14 89.8 0.157 17 17.4 128129
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.17 2.3 56.2 1.711 0.93 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4OU9 2.165 50.138 128085 6323 89.813 0.182 0.1807 0.2055 0.1901 RANDOM 40.645
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.582 0.291 0.582 -1.887
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.561 r_dihedral_angle_3_deg 11.941 r_dihedral_angle_1_deg 7.173 r_lrange_it 5.752 r_lrange_other 5.731 r_scangle_it 4.138 r_scangle_other 4.137 r_mcangle_other 3.099 r_mcangle_it 3.097 r_scbond_it 2.436
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.561 r_dihedral_angle_3_deg 11.941 r_dihedral_angle_1_deg 7.173 r_lrange_it 5.752 r_lrange_other 5.731 r_scangle_it 4.138 r_scangle_other 4.137 r_mcangle_other 3.099 r_mcangle_it 3.097 r_scbond_it 2.436 r_scbond_other 2.435 r_mcbond_it 1.92 r_mcbond_other 1.92 r_dihedral_angle_2_deg 1.352 r_angle_refined_deg 0.921 r_angle_other_deg 0.315 r_nbd_other 0.227 r_nbd_refined 0.186 r_symmetry_nbd_other 0.183 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.136 r_symmetry_nbd_refined 0.131 r_symmetry_xyhbond_nbd_refined 0.125 r_symmetry_xyhbond_nbd_other 0.108 r_symmetry_nbtor_other 0.078 r_ncsr_local_group_3 0.056 r_ncsr_local_group_1 0.054 r_ncsr_local_group_6 0.052 r_ncsr_local_group_2 0.05 r_ncsr_local_group_4 0.05 r_ncsr_local_group_5 0.05 r_chiral_restr 0.046 r_chiral_restr_other 0.016 r_metal_ion_refined 0.008 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15941 Nucleic Acid Atoms Solvent Atoms 1142 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing