5U6O

Structure of the human HCN1 hyperpolarization-activated cyclic nucleotide-gated ion channel


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg23.386
r_long_range_B_refined22.399
r_long_range_B_other22.398
r_scangle_other18.297
r_dihedral_angle_4_deg13.813
r_mcangle_it13.172
r_mcangle_other13.171
r_dihedral_angle_3_deg12.112
r_scbond_it10.714
r_scbond_other10.713
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg23.386
r_long_range_B_refined22.399
r_long_range_B_other22.398
r_scangle_other18.297
r_dihedral_angle_4_deg13.813
r_mcangle_it13.172
r_mcangle_other13.171
r_dihedral_angle_3_deg12.112
r_scbond_it10.714
r_scbond_other10.713
r_mcbond_it8.381
r_mcbond_other8.378
r_dihedral_angle_1_deg4.586
r_angle_refined_deg1.207
r_angle_other_deg0.891
r_chiral_restr0.073
r_bond_refined_d0.008
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Human HCN1 hyperpolarization-activated cyclic nucleotide-gated ion channel
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles55870
Reported Resolution (Å)3.5
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Point SymmetryC4
Data Acquisition
Detector TypeGATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å**2)1.26
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)1500
Maximum Defocus (nm)3300
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION