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Psf4 in complex with Mn2+ and (R)-2-HPP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 282 22% PEG 3350
0.2 M Ammonium Citrate
10 mg/mL Psf4
Crystal Properties Matthews coefficient Solvent content 2.28 46.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.464 α = 90 b = 111.287 β = 90 c = 128.499 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2014-03-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97857 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 84.12 100 0.093 0.999 20.8 8.1 28174
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.49 2.498 97.6 0.994 0.687 2.2 8.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.49 84.12 26750 1363 99.97 0.20605 0.20376 0.2062 0.25003 0.2476 RANDOM 50.298
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 0.79 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.544 r_dihedral_angle_3_deg 16.012 r_dihedral_angle_4_deg 15.967 r_long_range_B_other 10.996 r_long_range_B_refined 10.978 r_dihedral_angle_1_deg 7.255 r_scangle_other 7.162 r_mcangle_it 6.524 r_mcangle_other 6.523 r_scbond_other 4.478
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.544 r_dihedral_angle_3_deg 16.012 r_dihedral_angle_4_deg 15.967 r_long_range_B_other 10.996 r_long_range_B_refined 10.978 r_dihedral_angle_1_deg 7.255 r_scangle_other 7.162 r_mcangle_it 6.524 r_mcangle_other 6.523 r_scbond_other 4.478 r_scbond_it 4.477 r_mcbond_it 4.163 r_mcbond_other 4.163 r_angle_refined_deg 1.556 r_angle_other_deg 1.401 r_chiral_restr 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.007 r_gen_planes_other 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5864 Nucleic Acid Atoms Solvent Atoms 188 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement XDS data reduction autoPROC data scaling PHASER phasing