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AtxE2 Isopeptidase - S527A Variant with Astexin3-dC4 Bound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 296 18% PEG3350, 0.3 M ammonium citrate dibasic
Crystal Properties Matthews coefficient Solvent content 2.61 52.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.253 α = 90 b = 202.854 β = 90 c = 110.399 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2016-06-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.97853 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 29.817 99.9 0.107 16.2 8.4 86021
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.207 99.9 0.737 2.8 8.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 29.817 81764 4255 99.84 0.15655 0.15445 0.19759 0.1838 RANDOM 34.766
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.03 -0.9 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.905 r_dihedral_angle_4_deg 19.764 r_dihedral_angle_3_deg 15.201 r_long_range_B_refined 8.274 r_long_range_B_other 8.219 r_dihedral_angle_1_deg 6.834 r_scangle_other 6.345 r_mcangle_it 4.287 r_mcangle_other 4.287 r_scbond_it 4.139
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.905 r_dihedral_angle_4_deg 19.764 r_dihedral_angle_3_deg 15.201 r_long_range_B_refined 8.274 r_long_range_B_other 8.219 r_dihedral_angle_1_deg 6.834 r_scangle_other 6.345 r_mcangle_it 4.287 r_mcangle_other 4.287 r_scbond_it 4.139 r_scbond_other 4.139 r_mcbond_it 2.986 r_mcbond_other 2.985 r_angle_refined_deg 1.748 r_angle_other_deg 1.191 r_chiral_restr 0.107 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10555 Nucleic Acid Atoms Solvent Atoms 910 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing